v2.1.1 *updated conditioning on marker - instead of dominant model, additive allele coding for markers is used now v2.1 *Major update: -added gene and marker based conditional analysis -impute file is expected to have markers in consecutive order (older lowmem sorted option) -print-gene option is added to get full information for a gene which is used in regression analysis -sex stratified analysis added -granvil can now read compressed genotype file v1.0.2 *added marker extraction and marker exclusion command line options *BETA and SE values are no longer adjusted by the number of markers analysed. Therefore - for meta-analysis please use weighted Z-score method (N and p-value) v1.0 *Major update: -Using SNPTESTv.2 format now -Command line options have been changed - please see the tutorial section for all new command line options -Output file format has new columns: total_maf - sum of MAF of all used markers in given gene region average_maf - average MAF of used markers in given gene region (total_maf / marker_count) -Beta and SE values are been adjusted by the number of markers analysed in gene region (to simplify the meta-analysis) -Additional info added to log file count in gene v0.8: *fixed an error - in dosage analysis, heterozygous probabilities were not counted if the first allele was not minor allele in genotype file v0.6: *change in the calculation of MAF in case of marker dosages - in previous version only high quality markers were used (probability of any genotype>=95%), now all probabilities are used for the MAF estimation.